echo First of all load pdb-file 1o0c!
pause

echo This is a Rasmol script to demonstrate tRNA structure 1o0c
pause

restrict rna
pause

define helix1 902-907B or 966-971B
define helix2 910-912B or 923-925B
define helix3 927-931B or 939-943B
define helix4 949-953B or 961-965B
define stems helix1 or helix2 or helix3 or helix4
echo tRNA helices are defined as helix1, helix2, helix3, helix4
echo their aggregate is defined as stems
pause

define loop1 913-922B
define loop2 932-938B
define loop3 954-960B
define loop4 944-948B
define loops (913-922B or 932-938B or 954-960B or 944-948B)
echo tRNA loops are defined as loop1, loop2, loop3, loop4
echo all of them are defined as loops
pause

define lends 972-976
echo unpaired end defined as lends
pause

define anticodon 934-936
echo nucleotides of anticodon are defined as anticodon
pause

select anticodon
color purple
wireframe 50
echo Anticodon is purple
pause

select helix1
color green
echo acceptor stem is green
pause

select helix2
color yellow
echo D-stem is yellow
pause

select helix3
color red
echo anticodon stem is red
pause

select helix4
color blue
echo T-stem is blue
pause